species:   Rhsol
pid:       PID0627
parent:    Rhi-milR-126
paralog:   
locus:     KB317786.1:44706-44800
matures:   ['UGAGACAUUCUGUGCUAAGAUG', 'UUUUUGUGCAGGAGGUUGAUGA']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317786.1:44706-44800

3 out of bounds
20 alignments
19 proper strand
14 stranded perfect matches

         **************************                          *************************         
UGUUGAGUGCGCAUUUUUGUGCAGGAGGUUGAUGAACAAUCAUUUACAGCAUCAAAUGUUGCCUGAGACAUUCUGUGCUAAGAUGGCUCUUCUUG
....(((.((.((((((.((((((((.((((((((....)))))..((((((...)))))).....))).)))))))).)))))))).)))....
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUG---------- l=22 a=1 c
-------------UUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=22 a=0 c*
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGG--------- l=23 a=3 ma
-----------CAUUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=24 a=0 ma*

-------------UUUUUGUGCAGGAGGUUGAUGAAa---------------------------------------------------------- l=24 a=1 
---------------UUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=20 a=1 
---------------UUUGUGCAGGAGGUUGAUGAA----------------------------------------------------------- l=21 a=1 
-----------------UGUGCAGGAGGUUGAUGAACAAU------------------------------------------------------- l=23 a=1 
-------------------UGCAGGAGGUUGAUGAACAA-------------------------------------------------------- l=20 a=1 
-------------------UGCAGGAGGUUGAUGAACAAU------------------------------------------------------- l=21 a=1 
-------------------UGCAGGAGGUUGAUGAACAAUCg----------------------------------------------------- l=23 a=1 
--------------------GCAGGAGGUUGAUGAACAAU------------------------------------------------------- l=20 a=1 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAG------------- l=19 a=1 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUG---------- l=22 a=1 (c)
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGG--------- l=23 a=3 (ma)
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGGu-------- l=24 a=1 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGGC-------- l=24 a=1 
---------------------------------------------------------------UGAGAuAUUCUGUGCUAAGAUGGCU------- l=25 a=1 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGGCa------- l=25 a=1 
--------------------------------------------------------------------CAUUCUGUGCUAAGAUGGCUCUU---- l=23 a=1 
----------------------------------------------------------------------UUCUGUGCUAAGAUGGCUCUUCUUG l=25 a=1 

mb-01011
ax-1011011
ku-01
ss-101111111000
fn-111
